Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-2P97503 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Nkx3-2P97503 H2af-ps-201ENSMUST00000119066 295 ntBASIC14.25□□□□□ -0.13
Nkx3-2P97503 Gm8318-201ENSMUST00000182954 872 ntBASIC14.25□□□□□ -0.13
Nkx3-2P97503 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Nkx3-2P97503 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-2P97503 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Gm45760-201ENSMUST00000212190 1782 ntBASIC14.24□□□□□ -0.13
Nkx3-2P97503 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Gm13597-201ENSMUST00000121239 375 ntBASIC14.24□□□□□ -0.13
Nkx3-2P97503 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Mir7036b-201ENSMUST00000184791 63 ntBASIC14.24□□□□□ -0.13
Nkx3-2P97503 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-2P97503 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-2P97503 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms