Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC14.29□□□□□ -0.12
Msx1P13297 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC14.29□□□□□ -0.12
Msx1P13297 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Msx1P13297 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Msx1P13297 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Gm16275-201ENSMUST00000147774 712 ntTSL 3 BASIC14.29□□□□□ -0.12
Msx1P13297 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Msx1P13297 Gm6546-201ENSMUST00000192096 766 ntBASIC14.29□□□□□ -0.12
Msx1P13297 Gm17968-201ENSMUST00000194902 784 ntBASIC14.29□□□□□ -0.12
Msx1P13297 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC14.29□□□□□ -0.12
Msx1P13297 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Msx1P13297 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
Msx1P13297 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Msx1P13297 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Msx1P13297 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Msx1P13297 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Msx1P13297 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Msx1P13297 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC14.28□□□□□ -0.12
Msx1P13297 Gm15358-201ENSMUST00000119249 520 ntBASIC14.28□□□□□ -0.12
Msx1P13297 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
Msx1P13297 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
Msx1P13297 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Gm16973-201ENSMUST00000180682 1299 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.28□□□□□ -0.12
Msx1P13297 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Msx1P13297 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC14.28□□□□□ -0.12
Msx1P13297 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC14.28□□□□□ -0.12
Msx1P13297 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 AC160980.1-201ENSMUST00000224136 970 ntBASIC14.28□□□□□ -0.12
Msx1P13297 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.28□□□□□ -0.12
Msx1P13297 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Msx1P13297 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Msx1P13297 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Msx1P13297 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
Msx1P13297 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
Msx1P13297 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Msx1P13297 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
Msx1P13297 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Msx1P13297 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Msx1P13297 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Msx1P13297 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Msx1P13297 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Msx1P13297 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Msx1P13297 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC14.27□□□□□ -0.12
Msx1P13297 AC157650.3-201ENSMUST00000225058 1476 ntBASIC14.27□□□□□ -0.12
Msx1P13297 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Msx1P13297 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Msx1P13297 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Msx1P13297 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Msx1P13297 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Msx1P13297 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Msx1P13297 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
Msx1P13297 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Msx1P13297 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC14.27□□□□□ -0.13
Msx1P13297 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC14.27□□□□□ -0.13
Msx1P13297 AC155252.2-201ENSMUST00000226946 680 ntBASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 58.1 ms