Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Lire1P11260 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Lire1P11260 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.3□□□□□ -0.12
Lire1P11260 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.3□□□□□ -0.12
Lire1P11260 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.3□□□□□ -0.12
Lire1P11260 Rbfox2-207ENSMUST00000227533 1041 ntBASIC14.3□□□□□ -0.12
Lire1P11260 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Lire1P11260 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Gm15442-201ENSMUST00000117905 1527 ntBASIC14.3□□□□□ -0.12
Lire1P11260 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Lire1P11260 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.3□□□□□ -0.12
Lire1P11260 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Lire1P11260 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
Lire1P11260 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC14.29□□□□□ -0.12
Lire1P11260 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC14.29□□□□□ -0.12
Lire1P11260 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC14.29□□□□□ -0.12
Lire1P11260 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Gm8000-201ENSMUST00000188378 592 ntBASIC14.29□□□□□ -0.12
Lire1P11260 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC14.29□□□□□ -0.12
Lire1P11260 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Lire1P11260 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Gm29340-201ENSMUST00000188763 3854 ntBASIC14.29□□□□□ -0.12
Lire1P11260 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC14.29□□□□□ -0.12
Lire1P11260 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.29□□□□□ -0.12
Lire1P11260 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC14.29□□□□□ -0.12
Lire1P11260 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lire1P11260 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC14.29□□□□□ -0.12
Lire1P11260 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC14.29□□□□□ -0.12
Lire1P11260 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Gm12350-201ENSMUST00000121208 462 ntBASIC14.28□□□□□ -0.12
Lire1P11260 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC14.28□□□□□ -0.12
Lire1P11260 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC14.28□□□□□ -0.12
Lire1P11260 Mir5131-201ENSMUST00000175426 93 ntBASIC14.28□□□□□ -0.12
Lire1P11260 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Lire1P11260 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.28□□□□□ -0.12
Lire1P11260 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC14.28□□□□□ -0.12
Lire1P11260 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lire1P11260 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lire1P11260 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Lire1P11260 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lire1P11260 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Lire1P11260 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lire1P11260 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lire1P11260 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Lire1P11260 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms