Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Gm18624-201ENSMUST00000220966 658 ntBASIC17.5■□□□□ 0.39
Col1a1P11087 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Col1a1P11087 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Col1a1P11087 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.49■□□□□ 0.39
Col1a1P11087 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Gm8602-201ENSMUST00000184045 607 ntBASIC17.49■□□□□ 0.39
Col1a1P11087 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Col1a1P11087 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 AC149588.3-201ENSMUST00000227515 150 ntBASIC17.49■□□□□ 0.39
Col1a1P11087 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC17.49■□□□□ 0.39
Col1a1P11087 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col1a1P11087 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC17.48■□□□□ 0.39
Col1a1P11087 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC17.48■□□□□ 0.39
Col1a1P11087 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Col1a1P11087 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col1a1P11087 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Col1a1P11087 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col1a1P11087 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC17.48■□□□□ 0.39
Col1a1P11087 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col1a1P11087 Mir7085-201ENSMUST00000184353 66 ntBASIC17.48■□□□□ 0.39
Col1a1P11087 Gm7390-201ENSMUST00000212452 1216 ntBASIC17.48■□□□□ 0.39
Col1a1P11087 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col1a1P11087 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col1a1P11087 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col1a1P11087 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col1a1P11087 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col1a1P11087 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col1a1P11087 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC17.48■□□□□ 0.39
Col1a1P11087 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col1a1P11087 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
Col1a1P11087 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC17.47■□□□□ 0.39
Col1a1P11087 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC17.47■□□□□ 0.39
Col1a1P11087 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC17.47■□□□□ 0.39
Col1a1P11087 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col1a1P11087 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
Col1a1P11087 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC17.46■□□□□ 0.39
Col1a1P11087 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 AC153962.4-201ENSMUST00000217878 242 ntBASIC17.46■□□□□ 0.39
Col1a1P11087 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Col1a1P11087 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC17.46■□□□□ 0.39
Col1a1P11087 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col1a1P11087 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
Col1a1P11087 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Col1a1P11087 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Col1a1P11087 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col1a1P11087 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col1a1P11087 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC17.45■□□□□ 0.38
Col1a1P11087 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC17.45■□□□□ 0.38
Col1a1P11087 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Col1a1P11087 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Col1a1P11087 AC125350.2-201ENSMUST00000224737 727 ntBASIC17.45■□□□□ 0.38
Col1a1P11087 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col1a1P11087 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col1a1P11087 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col1a1P11087 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC17.45■□□□□ 0.38
Col1a1P11087 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col1a1P11087 Dancr-204ENSMUST00000132389 2347 ntBASIC17.45■□□□□ 0.38
Col1a1P11087 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.45■□□□□ 0.38
Col1a1P11087 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col1a1P11087 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 64 ms