Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Gm6443-201ENSMUST00000203599 874 ntBASIC16.43■□□□□ 0.22
Chmp6P0C0A3 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Chmp6P0C0A3 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Gm7787-201ENSMUST00000216858 688 ntBASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC16.42■□□□□ 0.22
Chmp6P0C0A3 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Gm1401-201ENSMUST00000122048 772 ntBASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chmp6P0C0A3 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms