Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxd3P09027 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxd3P09027 Gm5648-201ENSMUST00000122244 1587 ntBASIC11.75□□□□□ -0.53
Hoxd3P09027 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxd3P09027 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC11.74□□□□□ -0.53
Hoxd3P09027 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Hoxd3P09027 Gm5177-201ENSMUST00000183092 997 ntBASIC11.74□□□□□ -0.53
Hoxd3P09027 Gm7556-201ENSMUST00000201178 1084 ntBASIC11.74□□□□□ -0.53
Hoxd3P09027 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Gm15500-202ENSMUST00000071641 1019 ntBASIC11.74□□□□□ -0.53
Hoxd3P09027 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Hoxd3P09027 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Hoxd3P09027 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
Hoxd3P09027 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Hoxd3P09027 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Hoxd3P09027 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Hoxd3P09027 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Gm23935-201ENSMUST00000102303 57 ntBASIC11.73□□□□□ -0.53
Hoxd3P09027 Gm24270-201ENSMUST00000102326 57 ntBASIC11.73□□□□□ -0.53
Hoxd3P09027 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxd3P09027 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Gm12008-201ENSMUST00000117791 755 ntBASIC11.73□□□□□ -0.53
Hoxd3P09027 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Gm24245-201ENSMUST00000157318 57 ntBASIC11.73□□□□□ -0.53
Hoxd3P09027 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxd3P09027 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Gm20618-202ENSMUST00000177482 1227 ntTSL 3 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Gm26540-201ENSMUST00000181858 1310 ntTSL 5 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Gm27301-201ENSMUST00000184012 127 ntBASIC11.73□□□□□ -0.53
Hoxd3P09027 Gm17968-201ENSMUST00000194902 784 ntBASIC11.73□□□□□ -0.53
Hoxd3P09027 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxd3P09027 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Thap2-203ENSMUST00000218989 527 ntBASIC11.73□□□□□ -0.53
Hoxd3P09027 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxd3P09027 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxd3P09027 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxd3P09027 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxd3P09027 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxd3P09027 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxd3P09027 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
Hoxd3P09027 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxd3P09027 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Gm11569-201ENSMUST00000105057 869 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC11.72□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms