Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
Col3a1P08121 Mir8102-201ENSMUST00000184148 139 ntBASIC17.84■□□□□ 0.45
Col3a1P08121 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col3a1P08121 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col3a1P08121 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Col3a1P08121 Gm24543-201ENSMUST00000103867 82 ntBASIC17.83■□□□□ 0.45
Col3a1P08121 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC17.83■□□□□ 0.45
Col3a1P08121 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Col3a1P08121 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC17.83■□□□□ 0.45
Col3a1P08121 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Col3a1P08121 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Col3a1P08121 Gm44344-201ENSMUST00000200287 129 ntBASIC17.83■□□□□ 0.45
Col3a1P08121 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Col3a1P08121 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col3a1P08121 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC17.83■□□□□ 0.45
Col3a1P08121 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col3a1P08121 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col3a1P08121 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Col3a1P08121 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.83■□□□□ 0.45
Col3a1P08121 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Col3a1P08121 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col3a1P08121 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Col3a1P08121 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Col3a1P08121 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Col3a1P08121 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Col3a1P08121 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Col3a1P08121 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col3a1P08121 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col3a1P08121 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col3a1P08121 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC17.82■□□□□ 0.44
Col3a1P08121 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Col3a1P08121 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
Col3a1P08121 Gm14719-201ENSMUST00000121891 340 ntBASIC17.82■□□□□ 0.44
Col3a1P08121 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col3a1P08121 Gm5866-201ENSMUST00000177881 973 ntBASIC17.82■□□□□ 0.44
Col3a1P08121 AC132863.2-201ENSMUST00000226643 799 ntBASIC17.82■□□□□ 0.44
Col3a1P08121 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Col3a1P08121 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC17.81■□□□□ 0.44
Col3a1P08121 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Col3a1P08121 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col3a1P08121 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC17.81■□□□□ 0.44
Col3a1P08121 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col3a1P08121 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col3a1P08121 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Col3a1P08121 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col3a1P08121 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Col3a1P08121 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.81■□□□□ 0.44
Col3a1P08121 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Col3a1P08121 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC17.81■□□□□ 0.44
Col3a1P08121 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Col3a1P08121 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC17.81■□□□□ 0.44
Col3a1P08121 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Col3a1P08121 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC17.81■□□□□ 0.44
Col3a1P08121 Dupd1-202ENSMUST00000224735 548 ntBASIC17.81■□□□□ 0.44
Col3a1P08121 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
Col3a1P08121 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col3a1P08121 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col3a1P08121 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Col3a1P08121 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC17.8■□□□□ 0.44
Col3a1P08121 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC17.8■□□□□ 0.44
Col3a1P08121 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col3a1P08121 Gm15487-201ENSMUST00000122373 465 ntBASIC17.8■□□□□ 0.44
Col3a1P08121 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms