Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 AC121598.1-201ENSMUST00000228224 1019 ntBASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Gm38037-201ENSMUST00000192600 1624 ntBASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Gm13612-201ENSMUST00000119276 390 ntBASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Gm15376-201ENSMUST00000122258 783 ntBASIC20.29■□□□□ 0.84
Scn4aQ9ER60 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Gm5276-201ENSMUST00000196683 1047 ntBASIC20.29■□□□□ 0.84
Scn4aQ9ER60 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Scn4aQ9ER60 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Gm13689-201ENSMUST00000119360 685 ntBASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Gm12997-201ENSMUST00000120207 640 ntBASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Gm16177-201ENSMUST00000120728 718 ntBASIC20.28■□□□□ 0.84
Scn4aQ9ER60 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Gm9182-201ENSMUST00000217829 639 ntBASIC20.28■□□□□ 0.84
Scn4aQ9ER60 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Mir433-201ENSMUST00000093564 124 ntBASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn4aQ9ER60 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Gm43138-201ENSMUST00000199123 708 ntBASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Gm6334-201ENSMUST00000207083 228 ntBASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Gm19309-201ENSMUST00000218295 205 ntBASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Gm44364-201ENSMUST00000198368 141 ntBASIC20.27■□□□□ 0.84
Scn4aQ9ER60 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Scn4aQ9ER60 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Gm2639-201ENSMUST00000156881 1297 ntBASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn4aQ9ER60 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms