Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgn3Q9DCB1 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgn3Q9DCB1 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Hmgn3Q9DCB1 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Gm13436-201ENSMUST00000120418 567 ntBASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgn3Q9DCB1 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Hmgn3Q9DCB1 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.21□□□□□ -0.14
Hmgn3Q9DCB1 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Hmgn3Q9DCB1 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Hmgn3Q9DCB1 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Hmgn3Q9DCB1 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Spsb2-203ENSMUST00000112473 1322 ntBASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Gm20472-201ENSMUST00000174403 1240 ntBASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Gm28182-201ENSMUST00000188354 2477 ntBASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgn3Q9DCB1 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Gm8242-201ENSMUST00000193029 1420 ntBASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Gm29994-201ENSMUST00000195495 1193 ntBASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgn3Q9DCB1 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 AC122901.1-201ENSMUST00000214203 1790 ntBASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgn3Q9DCB1 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms