Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Use1Q9CQ56 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC14.29□□□□□ -0.12
Use1Q9CQ56 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Gm7284-201ENSMUST00000131667 944 ntBASIC14.29□□□□□ -0.12
Use1Q9CQ56 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.29□□□□□ -0.12
Use1Q9CQ56 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Use1Q9CQ56 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Gm33142-201ENSMUST00000193913 867 ntBASIC14.28□□□□□ -0.12
Use1Q9CQ56 Gm37728-201ENSMUST00000195025 2292 ntBASIC14.28□□□□□ -0.12
Use1Q9CQ56 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Gm45133-201ENSMUST00000207548 2773 ntBASIC14.28□□□□□ -0.12
Use1Q9CQ56 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms