Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 AC158538.2-201ENSMUST00000225455 906 ntBASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC15.81■□□□□ 0.12
Ccdc40Q8BI79 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Ntrk2-208ENSMUST00000225583 2719 ntBASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Mypopos-202ENSMUST00000205975 2321 ntBASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Ccdc40Q8BI79 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 AC160338.1-201ENSMUST00000214232 705 ntBASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC15.79■□□□□ 0.12
Ccdc40Q8BI79 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ccdc40Q8BI79 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 Gm15358-201ENSMUST00000119249 520 ntBASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 Gm7286-201ENSMUST00000182691 1007 ntBASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 AC160980.1-201ENSMUST00000224136 970 ntBASIC15.77■□□□□ 0.12
Ccdc40Q8BI79 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Ccdc40Q8BI79 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Ccdc40Q8BI79 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms