Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC14.1□□□□□ -0.15
ShhQ62226 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC14.1□□□□□ -0.15
ShhQ62226 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
ShhQ62226 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC14.1□□□□□ -0.15
ShhQ62226 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
ShhQ62226 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
ShhQ62226 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC14.1□□□□□ -0.15
ShhQ62226 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
ShhQ62226 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC14.09□□□□□ -0.15
ShhQ62226 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC14.09□□□□□ -0.15
ShhQ62226 Gm18622-201ENSMUST00000219361 595 ntBASIC14.09□□□□□ -0.15
ShhQ62226 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
ShhQ62226 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC14.09□□□□□ -0.15
ShhQ62226 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ShhQ62226 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
ShhQ62226 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
ShhQ62226 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
ShhQ62226 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.08□□□□□ -0.16
ShhQ62226 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC14.08□□□□□ -0.16
ShhQ62226 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
ShhQ62226 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
ShhQ62226 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC14.08□□□□□ -0.16
ShhQ62226 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 AC159106.1-201ENSMUST00000224421 690 ntBASIC14.08□□□□□ -0.16
ShhQ62226 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC14.08□□□□□ -0.16
ShhQ62226 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ShhQ62226 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC14.07□□□□□ -0.16
ShhQ62226 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.07□□□□□ -0.16
ShhQ62226 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
ShhQ62226 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC14.07□□□□□ -0.16
ShhQ62226 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC14.07□□□□□ -0.16
ShhQ62226 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
ShhQ62226 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC14.07□□□□□ -0.16
ShhQ62226 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC14.07□□□□□ -0.16
ShhQ62226 Mir7023-201ENSMUST00000185093 64 ntBASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms