Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Nr1h4Q60641 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nr1h4Q60641 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nr1h4Q60641 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nr1h4Q60641 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nr1h4Q60641 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nr1h4Q60641 Efs-202ENSMUST00000227037 2540 ntBASIC14.4□□□□□ -0.1
Nr1h4Q60641 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nr1h4Q60641 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Nr1h4Q60641 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.11
Nr1h4Q60641 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Gm37305-201ENSMUST00000195714 4279 ntBASIC14.39□□□□□ -0.11
Nr1h4Q60641 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC14.39□□□□□ -0.11
Nr1h4Q60641 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Mypopos-202ENSMUST00000205975 2321 ntBASIC14.39□□□□□ -0.11
Nr1h4Q60641 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nr1h4Q60641 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.38□□□□□ -0.11
Nr1h4Q60641 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nr1h4Q60641 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Nr1h4Q60641 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Gm12134-201ENSMUST00000122109 520 ntBASIC14.37□□□□□ -0.11
Nr1h4Q60641 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Nr1h4Q60641 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms