Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Rnf180Q3U827 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rnf180Q3U827 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rnf180Q3U827 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rnf180Q3U827 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Rnf180Q3U827 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Gm12928-201ENSMUST00000117115 573 ntBASIC17.56■□□□□ 0.4
Rnf180Q3U827 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Gm37986-201ENSMUST00000193285 383 ntBASIC17.56■□□□□ 0.4
Rnf180Q3U827 Gm6916-202ENSMUST00000205523 195 ntBASIC17.56■□□□□ 0.4
Rnf180Q3U827 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Gm5363-201ENSMUST00000211927 938 ntBASIC17.56■□□□□ 0.4
Rnf180Q3U827 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Rnf180Q3U827 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Rnf180Q3U827 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Rnf180Q3U827 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf180Q3U827 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC17.54■□□□□ 0.4
Rnf180Q3U827 Gm12846-201ENSMUST00000120431 1373 ntBASIC17.54■□□□□ 0.4
Rnf180Q3U827 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf180Q3U827 Gm8775-201ENSMUST00000170943 1327 ntBASIC17.54■□□□□ 0.4
Rnf180Q3U827 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf180Q3U827 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC17.54■□□□□ 0.4
Rnf180Q3U827 Gm15429-201ENSMUST00000151268 798 ntBASIC17.54■□□□□ 0.4
Rnf180Q3U827 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC17.54■□□□□ 0.4
Rnf180Q3U827 Gm45098-201ENSMUST00000207179 657 ntBASIC17.54■□□□□ 0.4
Rnf180Q3U827 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC17.54■□□□□ 0.4
Rnf180Q3U827 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Rnf180Q3U827 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Gm15460-201ENSMUST00000118147 391 ntBASIC17.53■□□□□ 0.4
Rnf180Q3U827 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Gm38002-201ENSMUST00000193255 180 ntBASIC17.53■□□□□ 0.4
Rnf180Q3U827 AC164567.1-201ENSMUST00000219185 960 ntBASIC17.53■□□□□ 0.4
Rnf180Q3U827 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Gm5161-201ENSMUST00000075243 853 ntBASIC17.53■□□□□ 0.4
Rnf180Q3U827 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf180Q3U827 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Gm24644-201ENSMUST00000157114 139 ntBASIC17.52■□□□□ 0.4
Rnf180Q3U827 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf180Q3U827 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC17.52■□□□□ 0.4
Rnf180Q3U827 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Gm38341-201ENSMUST00000195357 515 ntBASIC17.52■□□□□ 0.4
Rnf180Q3U827 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC17.52■□□□□ 0.4
Rnf180Q3U827 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf180Q3U827 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Rnf180Q3U827 Gm45751-201ENSMUST00000210185 1573 ntBASIC17.52■□□□□ 0.39
Rnf180Q3U827 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rnf180Q3U827 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms