Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msx1P13297 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msx1P13297 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msx1P13297 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msx1P13297 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msx1P13297 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msx1P13297 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Msx1P13297 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC14.32□□□□□ -0.12
Msx1P13297 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Vmn1r207-ps-201ENSMUST00000119931 1073 ntBASIC14.32□□□□□ -0.12
Msx1P13297 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC14.32□□□□□ -0.12
Msx1P13297 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Msx1P13297 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Vmn1r-ps10-201ENSMUST00000176165 889 ntBASIC14.32□□□□□ -0.12
Msx1P13297 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC14.32□□□□□ -0.12
Msx1P13297 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Msx1P13297 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
Msx1P13297 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC14.32□□□□□ -0.12
Msx1P13297 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Msx1P13297 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC14.32□□□□□ -0.12
Msx1P13297 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Msx1P13297 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Msx1P13297 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Msx1P13297 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Msx1P13297 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC14.31□□□□□ -0.12
Msx1P13297 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Gm11185-201ENSMUST00000117732 1007 ntBASIC14.31□□□□□ -0.12
Msx1P13297 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC14.31□□□□□ -0.12
Msx1P13297 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC14.31□□□□□ -0.12
Msx1P13297 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Gm42626-201ENSMUST00000196866 1148 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 AC093926.2-201ENSMUST00000214468 1228 ntBASIC14.31□□□□□ -0.12
Msx1P13297 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.31□□□□□ -0.12
Msx1P13297 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC14.31□□□□□ -0.12
Msx1P13297 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Msx1P13297 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC14.31□□□□□ -0.12
Msx1P13297 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Msx1P13297 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC14.31□□□□□ -0.12
Msx1P13297 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC14.3□□□□□ -0.12
Msx1P13297 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC14.3□□□□□ -0.12
Msx1P13297 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC14.3□□□□□ -0.12
Msx1P13297 Mir7036b-201ENSMUST00000184791 63 ntBASIC14.3□□□□□ -0.12
Msx1P13297 Gm5312-201ENSMUST00000203728 547 ntBASIC14.3□□□□□ -0.12
Msx1P13297 Gm20949-201ENSMUST00000206478 952 ntBASIC14.3□□□□□ -0.12
Msx1P13297 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Msx1P13297 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Msx1P13297 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms