Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col1a1P11087 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col1a1P11087 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Col1a1P11087 Gm27631-201ENSMUST00000184163 466 ntBASIC17.53■□□□□ 0.4
Col1a1P11087 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col1a1P11087 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC17.53■□□□□ 0.4
Col1a1P11087 Gm9908-201ENSMUST00000211534 448 ntBASIC17.53■□□□□ 0.4
Col1a1P11087 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col1a1P11087 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Col1a1P11087 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Col1a1P11087 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Col1a1P11087 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.53■□□□□ 0.4
Col1a1P11087 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC17.53■□□□□ 0.4
Col1a1P11087 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Col1a1P11087 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col1a1P11087 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.53■□□□□ 0.4
Col1a1P11087 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col1a1P11087 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Col1a1P11087 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.53■□□□□ 0.4
Col1a1P11087 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col1a1P11087 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.52■□□□□ 0.4
Col1a1P11087 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col1a1P11087 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col1a1P11087 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Col1a1P11087 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Col1a1P11087 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col1a1P11087 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col1a1P11087 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC17.52■□□□□ 0.4
Col1a1P11087 Gm21854-201ENSMUST00000179901 471 ntBASIC17.52■□□□□ 0.4
Col1a1P11087 Gm9522-201ENSMUST00000182394 926 ntBASIC17.52■□□□□ 0.4
Col1a1P11087 Gm37917-201ENSMUST00000194711 392 ntBASIC17.52■□□□□ 0.4
Col1a1P11087 Gm45453-201ENSMUST00000211758 853 ntBASIC17.52■□□□□ 0.4
Col1a1P11087 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC17.52■□□□□ 0.4
Col1a1P11087 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Col1a1P11087 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC17.52■□□□□ 0.4
Col1a1P11087 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Col1a1P11087 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Col1a1P11087 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.52■□□□□ 0.4
Col1a1P11087 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col1a1P11087 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Col1a1P11087 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Col1a1P11087 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col1a1P11087 App-207ENSMUST00000227737 2827 ntBASIC17.52■□□□□ 0.39
Col1a1P11087 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col1a1P11087 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col1a1P11087 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Gm7820-201ENSMUST00000121012 1052 ntBASIC17.51■□□□□ 0.39
Col1a1P11087 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC17.51■□□□□ 0.39
Col1a1P11087 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Gm6944-201ENSMUST00000182449 1006 ntBASIC17.51■□□□□ 0.39
Col1a1P11087 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Gm18062-201ENSMUST00000208020 547 ntBASIC17.51■□□□□ 0.39
Col1a1P11087 Gm18055-201ENSMUST00000208254 547 ntBASIC17.51■□□□□ 0.39
Col1a1P11087 Gm9229-201ENSMUST00000222777 126 ntBASIC17.51■□□□□ 0.39
Col1a1P11087 AC149294.4-201ENSMUST00000227870 882 ntBASIC17.51■□□□□ 0.39
Col1a1P11087 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.51■□□□□ 0.39
Col1a1P11087 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Col1a1P11087 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC17.51■□□□□ 0.39
Col1a1P11087 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC17.51■□□□□ 0.39
Col1a1P11087 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col1a1P11087 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col1a1P11087 Gm13464-201ENSMUST00000119418 935 ntBASIC17.5■□□□□ 0.39
Col1a1P11087 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC17.5■□□□□ 0.39
Col1a1P11087 Gm4691-201ENSMUST00000182339 1000 ntBASIC17.5■□□□□ 0.39
Col1a1P11087 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Col1a1P11087 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC17.5■□□□□ 0.39
Col1a1P11087 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC17.5■□□□□ 0.39
Col1a1P11087 Gm2451-201ENSMUST00000199447 999 ntBASIC17.5■□□□□ 0.39
Col1a1P11087 Gm10290-201ENSMUST00000200451 999 ntBASIC17.5■□□□□ 0.39
Col1a1P11087 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC17.5■□□□□ 0.39
Col1a1P11087 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Col1a1P11087 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Col1a1P11087 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col1a1P11087 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC17.5■□□□□ 0.39
Col1a1P11087 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col1a1P11087 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms