Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Mir5131-201ENSMUST00000175426 93 ntBASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Gm2651-201ENSMUST00000203560 838 ntBASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim3Q9R1R2 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 BC037039-201ENSMUST00000192003 2205 ntBASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Prkcz2-201ENSMUST00000206136 1756 ntBASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 AC127302.2-201ENSMUST00000215212 268 ntBASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim3Q9R1R2 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim3Q9R1R2 Gm37736-201ENSMUST00000193564 2802 ntBASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms