Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 AC174678.1-201ENSMUST00000228007 2749 ntBASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Gm11764-201ENSMUST00000120221 623 ntBASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 AV026068-213ENSMUST00000223675 1171 ntBASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Gm7461-201ENSMUST00000058918 827 ntBASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
Prpf40aQ9R1C7 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Gm37153-201ENSMUST00000193637 231 ntBASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prpf40aQ9R1C7 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Prpf40aQ9R1C7 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40aQ9R1C7 Gm43598-201ENSMUST00000202482 2479 ntBASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms