Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Gm6222-201ENSMUST00000120787 396 ntBASIC17.75■□□□□ 0.43
Scn11aQ9R053 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Gm9726-201ENSMUST00000180321 678 ntBASIC17.75■□□□□ 0.43
Scn11aQ9R053 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn11aQ9R053 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Scn11aQ9R053 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Gm21009-201ENSMUST00000197169 1669 ntBASIC17.74■□□□□ 0.43
Scn11aQ9R053 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Gm6888-201ENSMUST00000221983 706 ntBASIC17.74■□□□□ 0.43
Scn11aQ9R053 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC17.74■□□□□ 0.43
Scn11aQ9R053 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
Scn11aQ9R053 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Gm13517-201ENSMUST00000120782 1495 ntBASIC17.74■□□□□ 0.43
Scn11aQ9R053 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Gm45059-201ENSMUST00000205558 1077 ntBASIC17.74■□□□□ 0.43
Scn11aQ9R053 Gm44719-201ENSMUST00000206404 149 ntBASIC17.74■□□□□ 0.43
Scn11aQ9R053 AC132863.2-201ENSMUST00000226643 799 ntBASIC17.74■□□□□ 0.43
Scn11aQ9R053 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn11aQ9R053 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn11aQ9R053 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC17.73■□□□□ 0.43
Scn11aQ9R053 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Gm44344-201ENSMUST00000200287 129 ntBASIC17.73■□□□□ 0.43
Scn11aQ9R053 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC17.73■□□□□ 0.43
Scn11aQ9R053 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn11aQ9R053 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Gm5566-201ENSMUST00000116118 459 ntBASIC17.72■□□□□ 0.43
Scn11aQ9R053 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Mir1938-201ENSMUST00000158746 100 ntBASIC17.72■□□□□ 0.43
Scn11aQ9R053 Gm16215-201ENSMUST00000161990 637 ntBASIC17.72■□□□□ 0.43
Scn11aQ9R053 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Gm13034-201ENSMUST00000121342 3177 ntBASIC17.72■□□□□ 0.43
Scn11aQ9R053 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scn11aQ9R053 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn11aQ9R053 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scn11aQ9R053 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn11aQ9R053 BC037039-201ENSMUST00000192003 2205 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms