Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 CT025626.1-201ENSMUST00000223735 1455 ntBASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Gm25948-201ENSMUST00000175334 112 ntBASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Gm7063-201ENSMUST00000186840 981 ntBASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 AC140397.2-201ENSMUST00000224213 834 ntBASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Fgf17-202ENSMUST00000227123 1336 ntBASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Gm18057-201ENSMUST00000208220 503 ntBASIC16.37■□□□□ 0.21
Trim54Q9ERP3 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Nudt18-203ENSMUST00000228768 1578 ntBASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim54Q9ERP3 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Gm14057-201ENSMUST00000120631 482 ntBASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim54Q9ERP3 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Gm42473-201ENSMUST00000201056 2291 ntBASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Gm45293-201ENSMUST00000209754 1812 ntBASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms