Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Rprl3-201ENSMUST00000157400 290 ntBASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 AC167013.2-201ENSMUST00000228520 2684 ntBASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lima1Q9ERG0 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Gm45546-201ENSMUST00000211053 2394 ntBASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lima1Q9ERG0 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Gm8349-201ENSMUST00000182720 1003 ntBASIC14.96□□□□□ -0.01
Lima1Q9ERG0 Gm27357-201ENSMUST00000183754 135 ntBASIC14.96□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 52.1 ms