Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Gm25406-201ENSMUST00000157599 105 ntBASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Ank2-226ENSMUST00000189368 339 ntBASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx28Q9CWT6 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx28Q9CWT6 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx28Q9CWT6 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx28Q9CWT6 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx28Q9CWT6 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx28Q9CWT6 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx28Q9CWT6 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx28Q9CWT6 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx28Q9CWT6 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ddx28Q9CWT6 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Gm9103-201ENSMUST00000119371 405 ntBASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Gm27357-201ENSMUST00000183754 135 ntBASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Gm17807-201ENSMUST00000186869 298 ntBASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ddx28Q9CWT6 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Gm9768-201ENSMUST00000206007 2861 ntBASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms