Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Gm8349-201ENSMUST00000182720 1003 ntBASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Gm5837-201ENSMUST00000191844 1369 ntBASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Smc1aQ9CU62 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Smc1aQ9CU62 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC16.96■□□□□ 0.3
Smc1aQ9CU62 Gm11960-202ENSMUST00000181063 2858 ntBASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Gm45546-201ENSMUST00000211053 2394 ntBASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Gm13036-201ENSMUST00000117799 748 ntBASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Gm6184-201ENSMUST00000120403 1261 ntBASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Smc1aQ9CU62 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Gm7222-201ENSMUST00000117512 906 ntBASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Gm14494-201ENSMUST00000118786 435 ntBASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Gm43575-201ENSMUST00000196420 516 ntBASIC16.94■□□□□ 0.3
Smc1aQ9CU62 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Tfap2a-203ENSMUST00000223869 2037 ntBASIC16.94■□□□□ 0.3
Smc1aQ9CU62 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Smc1aQ9CU62 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Gm45605-201ENSMUST00000210265 4269 ntBASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms