Protein–RNA interactions for Protein: Q91Y11

Pcdha9, Protocadherin alpha-9, mousemouse

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha9Q91Y11 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdha9Q91Y11 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdha9Q91Y11 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdha9Q91Y11 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Pcdha9Q91Y11 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdha9Q91Y11 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdha9Q91Y11 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Pcdha9Q91Y11 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Pcdha9Q91Y11 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Pcdha9Q91Y11 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Pcdha9Q91Y11 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Gm2272-201ENSMUST00000194903 582 ntBASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 AW822252-206ENSMUST00000208904 237 ntBASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Mxra8os-201ENSMUST00000097740 687 ntBASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Sybu-209ENSMUST00000228639 4113 ntBASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdha9Q91Y11 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 AC164567.1-201ENSMUST00000219185 960 ntBASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdha9Q91Y11 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Gm13034-201ENSMUST00000121342 3177 ntBASIC16.06■□□□□ 0.16
Pcdha9Q91Y11 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Gm43514-201ENSMUST00000198852 424 ntBASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdha9Q91Y11 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdha9Q91Y11 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms