Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc9Q8VC31 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.27■□□□□ 0.52
Ccdc9Q8VC31 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ccdc9Q8VC31 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ccdc9Q8VC31 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ccdc9Q8VC31 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Gm43570-201ENSMUST00000199951 3688 ntBASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC18.26■□□□□ 0.51
Ccdc9Q8VC31 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc9Q8VC31 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Gm12008-201ENSMUST00000117791 755 ntBASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Gm30437-201ENSMUST00000206086 1201 ntBASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc9Q8VC31 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Gm42872-201ENSMUST00000200026 1967 ntBASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Gm4974-201ENSMUST00000209974 875 ntBASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ccdc9Q8VC31 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ccdc9Q8VC31 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms