Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC18.28■□□□□ 0.52
Brf1Q8CFK2 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Psmb5-202ENSMUST00000227257 622 ntBASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Gm29361-201ENSMUST00000183323 2000 ntBASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Gm14140-201ENSMUST00000119999 995 ntBASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Brf1Q8CFK2 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Brf1Q8CFK2 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Brf1Q8CFK2 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Brf1Q8CFK2 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Brf1Q8CFK2 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Brf1Q8CFK2 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Brf1Q8CFK2 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Brf1Q8CFK2 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Brf1Q8CFK2 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Gm5364-201ENSMUST00000216789 889 ntBASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Brf1Q8CFK2 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Gm30437-201ENSMUST00000206086 1201 ntBASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Brf1Q8CFK2 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms