Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.32□□□□□ -0.44
Col7a1Q63870 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC12.32□□□□□ -0.44
Col7a1Q63870 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col7a1Q63870 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col7a1Q63870 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Col7a1Q63870 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC12.31□□□□□ -0.44
Col7a1Q63870 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Col7a1Q63870 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
Col7a1Q63870 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC12.31□□□□□ -0.44
Col7a1Q63870 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Col7a1Q63870 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Gm27331-201ENSMUST00000183705 60 ntBASIC12.31□□□□□ -0.44
Col7a1Q63870 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC12.31□□□□□ -0.44
Col7a1Q63870 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC12.31□□□□□ -0.44
Col7a1Q63870 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Gm28265-201ENSMUST00000188201 2319 ntBASIC12.31□□□□□ -0.44
Col7a1Q63870 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC12.31□□□□□ -0.44
Col7a1Q63870 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC12.31□□□□□ -0.44
Col7a1Q63870 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Col7a1Q63870 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col7a1Q63870 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
Col7a1Q63870 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC12.3□□□□□ -0.44
Col7a1Q63870 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC12.3□□□□□ -0.44
Col7a1Q63870 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Col7a1Q63870 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Col7a1Q63870 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC12.3□□□□□ -0.44
Col7a1Q63870 Gm45880-201ENSMUST00000213041 853 ntBASIC12.3□□□□□ -0.44
Col7a1Q63870 AC125117.1-201ENSMUST00000228121 468 ntBASIC12.3□□□□□ -0.44
Col7a1Q63870 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Col7a1Q63870 Gm45667-201ENSMUST00000210380 1316 ntBASIC12.3□□□□□ -0.44
Col7a1Q63870 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC12.3□□□□□ -0.44
Col7a1Q63870 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Gm11793-201ENSMUST00000120433 981 ntBASIC12.3□□□□□ -0.44
Col7a1Q63870 Gm12749-201ENSMUST00000122138 1159 ntBASIC12.3□□□□□ -0.44
Col7a1Q63870 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
Col7a1Q63870 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col7a1Q63870 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Col7a1Q63870 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Gm12928-201ENSMUST00000117115 573 ntBASIC12.29□□□□□ -0.44
Col7a1Q63870 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC12.29□□□□□ -0.44
Col7a1Q63870 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC12.29□□□□□ -0.44
Col7a1Q63870 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC12.29□□□□□ -0.44
Col7a1Q63870 AC121804.3-201ENSMUST00000223420 295 ntBASIC12.29□□□□□ -0.44
Col7a1Q63870 AC154846.1-201ENSMUST00000226278 862 ntBASIC12.29□□□□□ -0.44
Col7a1Q63870 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Col7a1Q63870 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.44
Col7a1Q63870 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.29□□□□□ -0.44
Col7a1Q63870 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC12.29□□□□□ -0.44
Col7a1Q63870 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col7a1Q63870 Gm27486-201ENSMUST00000184923 80 ntBASIC12.29□□□□□ -0.44
Col7a1Q63870 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Col7a1Q63870 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms