Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 AC124549.3-201ENSMUST00000225541 367 ntBASIC14.13□□□□□ -0.15
ShhQ62226 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
ShhQ62226 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
ShhQ62226 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
ShhQ62226 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC14.12□□□□□ -0.15
ShhQ62226 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
ShhQ62226 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Gm11764-201ENSMUST00000120221 623 ntBASIC14.12□□□□□ -0.15
ShhQ62226 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC14.12□□□□□ -0.15
ShhQ62226 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC14.12□□□□□ -0.15
ShhQ62226 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
ShhQ62226 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC14.12□□□□□ -0.15
ShhQ62226 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
ShhQ62226 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
ShhQ62226 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Gm44616-201ENSMUST00000206417 1732 ntBASIC14.12□□□□□ -0.15
ShhQ62226 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
ShhQ62226 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC14.12□□□□□ -0.15
ShhQ62226 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC14.12□□□□□ -0.15
ShhQ62226 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
ShhQ62226 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ShhQ62226 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ShhQ62226 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC14.11□□□□□ -0.15
ShhQ62226 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC14.11□□□□□ -0.15
ShhQ62226 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC14.11□□□□□ -0.15
ShhQ62226 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ShhQ62226 AC163637.1-201ENSMUST00000215491 1894 ntBASIC14.11□□□□□ -0.15
ShhQ62226 AC131709.1-201ENSMUST00000224731 1180 ntBASIC14.11□□□□□ -0.15
ShhQ62226 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
ShhQ62226 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
ShhQ62226 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ShhQ62226 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
ShhQ62226 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ShhQ62226 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC14.11□□□□□ -0.15
ShhQ62226 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
ShhQ62226 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
ShhQ62226 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
ShhQ62226 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
ShhQ62226 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
ShhQ62226 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 Mir1895-201ENSMUST00000122615 79 ntBASIC14.1□□□□□ -0.15
ShhQ62226 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ShhQ62226 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms