Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Vps54Q5SPW0 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Gm15427-201ENSMUST00000117288 531 ntBASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Gm6226-201ENSMUST00000117765 1146 ntBASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC18.15■□□□□ 0.5
Vps54Q5SPW0 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Vps54Q5SPW0 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
Vps54Q5SPW0 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Vps54Q5SPW0 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Gm45212-201ENSMUST00000205831 3403 ntBASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Gm24513-201ENSMUST00000174964 138 ntBASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Gm27397-201ENSMUST00000184997 107 ntBASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Gm20553-201ENSMUST00000204205 844 ntBASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Gm10154-201ENSMUST00000084445 354 ntBASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Vps54Q5SPW0 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC18.13■□□□□ 0.49
Vps54Q5SPW0 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC18.13■□□□□ 0.49
Vps54Q5SPW0 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms