Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Col8a1Q00780 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Gm13517-201ENSMUST00000120782 1495 ntBASIC12.91□□□□□ -0.34
Col8a1Q00780 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC12.9□□□□□ -0.34
Col8a1Q00780 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
Col8a1Q00780 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Col8a1Q00780 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC12.9□□□□□ -0.34
Col8a1Q00780 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC12.9□□□□□ -0.34
Col8a1Q00780 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC12.9□□□□□ -0.34
Col8a1Q00780 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC12.9□□□□□ -0.34
Col8a1Q00780 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC12.9□□□□□ -0.34
Col8a1Q00780 AC124732.1-201ENSMUST00000221551 910 ntBASIC12.9□□□□□ -0.34
Col8a1Q00780 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Col8a1Q00780 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC12.9□□□□□ -0.34
Col8a1Q00780 Gm10154-201ENSMUST00000084445 354 ntBASIC12.9□□□□□ -0.34
Col8a1Q00780 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Col8a1Q00780 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC12.9□□□□□ -0.34
Col8a1Q00780 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col8a1Q00780 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
Col8a1Q00780 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Col8a1Q00780 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Col8a1Q00780 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Col8a1Q00780 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Gm8839-201ENSMUST00000121279 1645 ntBASIC12.89□□□□□ -0.35
Col8a1Q00780 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC12.89□□□□□ -0.35
Col8a1Q00780 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC12.89□□□□□ -0.35
Col8a1Q00780 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Col8a1Q00780 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC12.89□□□□□ -0.35
Col8a1Q00780 Gm15487-201ENSMUST00000122373 465 ntBASIC12.89□□□□□ -0.35
Col8a1Q00780 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC12.89□□□□□ -0.35
Col8a1Q00780 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Col8a1Q00780 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC12.89□□□□□ -0.35
Col8a1Q00780 AC158538.2-201ENSMUST00000225455 906 ntBASIC12.89□□□□□ -0.35
Col8a1Q00780 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC12.89□□□□□ -0.35
Col8a1Q00780 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Col8a1Q00780 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
Col8a1Q00780 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC12.89□□□□□ -0.35
Col8a1Q00780 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col8a1Q00780 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col8a1Q00780 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col8a1Q00780 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col8a1Q00780 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Col8a1Q00780 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Col8a1Q00780 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col8a1Q00780 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col8a1Q00780 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col8a1Q00780 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col8a1Q00780 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col8a1Q00780 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Col8a1Q00780 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col8a1Q00780 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC12.88□□□□□ -0.35
Col8a1Q00780 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC12.88□□□□□ -0.35
Col8a1Q00780 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC12.88□□□□□ -0.35
Col8a1Q00780 CT010478.1-201ENSMUST00000220747 2787 ntBASIC12.88□□□□□ -0.35
Col8a1Q00780 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC12.88□□□□□ -0.35
Col8a1Q00780 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col8a1Q00780 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Col8a1Q00780 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms