Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Gm45328-201ENSMUST00000210942 917 ntBASIC18.13■□□□□ 0.49
Rfx1P48377 AC117588.1-201ENSMUST00000228510 999 ntBASIC18.13■□□□□ 0.49
Rfx1P48377 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC18.13■□□□□ 0.49
Rfx1P48377 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Rfx1P48377 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Rfx1P48377 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Gm12620-201ENSMUST00000119791 1986 ntBASIC18.13■□□□□ 0.49
Rfx1P48377 Gm12612-201ENSMUST00000140182 1986 ntBASIC18.13■□□□□ 0.49
Rfx1P48377 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Rfx1P48377 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Rfx1P48377 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
Rfx1P48377 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC18.12■□□□□ 0.49
Rfx1P48377 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Rfx1P48377 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Rfx1P48377 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Rfx1P48377 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Fbxl12-205ENSMUST00000140702 1555 ntBASIC18.12■□□□□ 0.49
Rfx1P48377 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Rfx1P48377 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Rfx1P48377 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx1P48377 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Rfx1P48377 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC18.11■□□□□ 0.49
Rfx1P48377 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC18.11■□□□□ 0.49
Rfx1P48377 Gm17808-201ENSMUST00000200859 894 ntBASIC18.11■□□□□ 0.49
Rfx1P48377 Vti1a-206ENSMUST00000225529 1244 ntBASIC18.11■□□□□ 0.49
Rfx1P48377 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Rfx1P48377 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Rfx1P48377 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC18.11■□□□□ 0.49
Rfx1P48377 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Gm8242-201ENSMUST00000193029 1420 ntBASIC18.11■□□□□ 0.49
Rfx1P48377 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx1P48377 Carlr-201ENSMUST00000181515 2574 ntBASIC18.1■□□□□ 0.49
Rfx1P48377 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Rfx1P48377 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC18.1■□□□□ 0.49
Rfx1P48377 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC18.1■□□□□ 0.49
Rfx1P48377 AC127349.1-201ENSMUST00000224590 266 ntBASIC18.1■□□□□ 0.49
Rfx1P48377 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx1P48377 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx1P48377 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms