Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col1a1P11087 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.57■□□□□ 0.4
Col1a1P11087 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col1a1P11087 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.57■□□□□ 0.4
Col1a1P11087 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col1a1P11087 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col1a1P11087 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col1a1P11087 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC17.56■□□□□ 0.4
Col1a1P11087 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Col1a1P11087 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Col1a1P11087 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC17.56■□□□□ 0.4
Col1a1P11087 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Col1a1P11087 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Col1a1P11087 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC17.56■□□□□ 0.4
Col1a1P11087 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC17.56■□□□□ 0.4
Col1a1P11087 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Gm44719-201ENSMUST00000206404 149 ntBASIC17.56■□□□□ 0.4
Col1a1P11087 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC17.56■□□□□ 0.4
Col1a1P11087 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC17.56■□□□□ 0.4
Col1a1P11087 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col1a1P11087 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
Col1a1P11087 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Col1a1P11087 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Col1a1P11087 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
Col1a1P11087 Gm12091-201ENSMUST00000146791 830 ntBASIC17.55■□□□□ 0.4
Col1a1P11087 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Col1a1P11087 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC17.55■□□□□ 0.4
Col1a1P11087 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Col1a1P11087 AC156016.3-201ENSMUST00000228623 344 ntBASIC17.55■□□□□ 0.4
Col1a1P11087 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Col1a1P11087 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col1a1P11087 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Celf4-206ENSMUST00000224553 1729 ntBASIC17.54■□□□□ 0.4
Col1a1P11087 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC17.54■□□□□ 0.4
Col1a1P11087 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Col1a1P11087 Gm9115-201ENSMUST00000120192 1348 ntBASIC17.54■□□□□ 0.4
Col1a1P11087 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Col1a1P11087 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.54■□□□□ 0.4
Col1a1P11087 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Col1a1P11087 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC17.54■□□□□ 0.4
Col1a1P11087 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Col1a1P11087 Gm45098-201ENSMUST00000207179 657 ntBASIC17.54■□□□□ 0.4
Col1a1P11087 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Col1a1P11087 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col1a1P11087 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Col1a1P11087 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Col1a1P11087 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col1a1P11087 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col1a1P11087 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms