Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC11.8□□□□□ -0.52
Hoxd3P09027 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC11.8□□□□□ -0.52
Hoxd3P09027 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Gm4913-201ENSMUST00000117075 1290 ntBASIC11.8□□□□□ -0.52
Hoxd3P09027 Gm4995-201ENSMUST00000117247 432 ntBASIC11.8□□□□□ -0.52
Hoxd3P09027 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC11.8□□□□□ -0.52
Hoxd3P09027 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
Hoxd3P09027 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
Hoxd3P09027 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC11.8□□□□□ -0.52
Hoxd3P09027 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC11.8□□□□□ -0.52
Hoxd3P09027 Gm18246-201ENSMUST00000221023 728 ntBASIC11.8□□□□□ -0.52
Hoxd3P09027 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Gm13294-201ENSMUST00000121757 1330 ntBASIC11.8□□□□□ -0.52
Hoxd3P09027 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Hoxd3P09027 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC11.79□□□□□ -0.52
Hoxd3P09027 Gm13597-201ENSMUST00000121239 375 ntBASIC11.79□□□□□ -0.52
Hoxd3P09027 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 AC154572.2-201ENSMUST00000225105 997 ntBASIC11.79□□□□□ -0.52
Hoxd3P09027 AC159295.1-201ENSMUST00000225326 940 ntBASIC11.79□□□□□ -0.52
Hoxd3P09027 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Gm5184-201ENSMUST00000220417 1702 ntBASIC11.79□□□□□ -0.52
Hoxd3P09027 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 AC119177.1-201ENSMUST00000227647 1332 ntBASIC11.79□□□□□ -0.52
Hoxd3P09027 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Hoxd3P09027 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Gm29361-201ENSMUST00000183323 2000 ntBASIC11.79□□□□□ -0.52
Hoxd3P09027 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Hoxd3P09027 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Hoxd3P09027 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxd3P09027 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 83.6 ms