Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Gm44981-201ENSMUST00000205549 1943 ntBASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 AC159093.1-201ENSMUST00000227779 380 ntBASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trbv3A0A0A6YYE2 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 AC166574.6-201ENSMUST00000227889 1806 ntBASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Gm42471-201ENSMUST00000201457 1865 ntBASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trbv3A0A0A6YYE2 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 CT025610.1-201ENSMUST00000224552 1786 ntBASIC11.67□□□□□ -0.54
Trbv3A0A0A6YYE2 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trbv3A0A0A6YYE2 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Trbv3A0A0A6YYE2 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trbv3A0A0A6YYE2 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms