Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC14.3□□□□□ -0.12
Trim3Q9R1R2 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim3Q9R1R2 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim3Q9R1R2 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Trim3Q9R1R2 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim3Q9R1R2 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim3Q9R1R2 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
Trim3Q9R1R2 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim3Q9R1R2 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim3Q9R1R2 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.3□□□□□ -0.12
Trim3Q9R1R2 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Gm18733-201ENSMUST00000173950 856 ntBASIC14.29□□□□□ -0.12
Trim3Q9R1R2 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim3Q9R1R2 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Gm7230-201ENSMUST00000173026 815 ntBASIC14.28□□□□□ -0.12
Trim3Q9R1R2 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Gm6089-201ENSMUST00000197666 938 ntBASIC14.28□□□□□ -0.12
Trim3Q9R1R2 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.28□□□□□ -0.12
Trim3Q9R1R2 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.28□□□□□ -0.12
Trim3Q9R1R2 AC117588.1-201ENSMUST00000228510 999 ntBASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim3Q9R1R2 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim3Q9R1R2 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim3Q9R1R2 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim3Q9R1R2 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim3Q9R1R2 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim3Q9R1R2 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim3Q9R1R2 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC14.27□□□□□ -0.12
Trim3Q9R1R2 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim3Q9R1R2 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim3Q9R1R2 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim3Q9R1R2 Gm38042-201ENSMUST00000191614 5208 ntBASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Trim3Q9R1R2 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms