Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Gm11839-201ENSMUST00000120647 1953 ntBASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Gm2308-201ENSMUST00000166539 1004 ntBASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Gm9449-201ENSMUST00000207265 1011 ntBASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Prpf40aQ9R1C7 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Gm15173-201ENSMUST00000122049 433 ntBASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC16.69■□□□□ 0.26
Prpf40aQ9R1C7 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Gm13034-201ENSMUST00000121342 3177 ntBASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Gm6550-201ENSMUST00000187574 993 ntBASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 AC159093.1-201ENSMUST00000227779 380 ntBASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Mzt1-203ENSMUST00000227948 952 ntBASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Prpf40aQ9R1C7 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
Prpf40aQ9R1C7 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms