Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.36□□□□□ -0.11
Use1Q9CQ56 AC159093.1-201ENSMUST00000227779 380 ntBASIC14.36□□□□□ -0.11
Use1Q9CQ56 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Use1Q9CQ56 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Gm37305-201ENSMUST00000195714 4279 ntBASIC14.35□□□□□ -0.11
Use1Q9CQ56 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Gm4459-201ENSMUST00000118750 468 ntBASIC14.35□□□□□ -0.11
Use1Q9CQ56 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Use1Q9CQ56 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Grk6-207ENSMUST00000225925 2769 ntBASIC14.34□□□□□ -0.11
Use1Q9CQ56 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Gm27867-201ENSMUST00000184778 125 ntBASIC14.34□□□□□ -0.11
Use1Q9CQ56 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Gm27704-201ENSMUST00000185094 107 ntBASIC14.34□□□□□ -0.11
Use1Q9CQ56 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.34□□□□□ -0.11
Use1Q9CQ56 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.34□□□□□ -0.11
Use1Q9CQ56 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Use1Q9CQ56 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Use1Q9CQ56 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Use1Q9CQ56 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Use1Q9CQ56 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms