Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Mir5130-201ENSMUST00000175160 84 ntBASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Gm7889-201ENSMUST00000185591 958 ntBASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rpa1Q8VEE4 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Gm14780-201ENSMUST00000118387 2737 ntBASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Krtap5-1-202ENSMUST00000188274 742 ntBASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rpa1Q8VEE4 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Nupl1-207ENSMUST00000225311 2475 ntBASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Gm18959-201ENSMUST00000208954 655 ntBASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 AC153881.2-201ENSMUST00000214877 204 ntBASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Gm43509-201ENSMUST00000196551 2594 ntBASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Gm8668-201ENSMUST00000120559 1447 ntBASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rpa1Q8VEE4 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Gm45058-201ENSMUST00000205810 766 ntBASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 AC148324.1-201ENSMUST00000219034 4240 ntBASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC15.3■□□□□ 0.04
Rpa1Q8VEE4 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Rpa1Q8VEE4 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms