Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 AC130669.1-201ENSMUST00000228537 1672 ntBASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Gm11873-201ENSMUST00000117877 1304 ntBASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Gm5366-201ENSMUST00000215494 1338 ntBASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Brf1Q8CFK2 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Gm1401-201ENSMUST00000122048 772 ntBASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Brf1Q8CFK2 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Gm13294-201ENSMUST00000121757 1330 ntBASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Gm44771-201ENSMUST00000206975 626 ntBASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Gm10584-201ENSMUST00000207036 2628 ntBASIC18.29■□□□□ 0.52
Brf1Q8CFK2 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Brf1Q8CFK2 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC18.28■□□□□ 0.52
Brf1Q8CFK2 Gm13597-201ENSMUST00000121239 375 ntBASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms