Protein–RNA interactions for Protein: Q8CDG3

Vcpip1, Deubiquitinating protein VCIP135, mousemouse

Predictions only

Length 1,220 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vcpip1Q8CDG3 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vcpip1Q8CDG3 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vcpip1Q8CDG3 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vcpip1Q8CDG3 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vcpip1Q8CDG3 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vcpip1Q8CDG3 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vcpip1Q8CDG3 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Gm45504-201ENSMUST00000211407 2107 ntBASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Gm30437-201ENSMUST00000206086 1201 ntBASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Vcpip1Q8CDG3 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Gm15358-201ENSMUST00000119249 520 ntBASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Gm18733-201ENSMUST00000173950 856 ntBASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vcpip1Q8CDG3 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Gm8097-201ENSMUST00000117903 829 ntBASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Cmtm5-203ENSMUST00000227441 610 ntBASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Rbfox2-207ENSMUST00000227533 1041 ntBASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vcpip1Q8CDG3 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vcpip1Q8CDG3 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vcpip1Q8CDG3 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vcpip1Q8CDG3 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Vcpip1Q8CDG3 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vcpip1Q8CDG3 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vcpip1Q8CDG3 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vcpip1Q8CDG3 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC16.28■□□□□ 0.2
Vcpip1Q8CDG3 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vcpip1Q8CDG3 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vcpip1Q8CDG3 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vcpip1Q8CDG3 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms