Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Gm27301-201ENSMUST00000184012 127 ntBASIC17.88■□□□□ 0.45
Trim56Q80VI1 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim56Q80VI1 AC225888.1-201ENSMUST00000227184 728 ntBASIC17.88■□□□□ 0.45
Trim56Q80VI1 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Trim56Q80VI1 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Trim56Q80VI1 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Gm4913-201ENSMUST00000117075 1290 ntBASIC17.87■□□□□ 0.45
Trim56Q80VI1 Gm37935-201ENSMUST00000192012 982 ntBASIC17.87■□□□□ 0.45
Trim56Q80VI1 Gm20553-201ENSMUST00000204205 844 ntBASIC17.87■□□□□ 0.45
Trim56Q80VI1 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Trim56Q80VI1 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim56Q80VI1 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Gm15500-202ENSMUST00000071641 1019 ntBASIC17.86■□□□□ 0.45
Trim56Q80VI1 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim56Q80VI1 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.85■□□□□ 0.45
Trim56Q80VI1 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Gm15427-201ENSMUST00000117288 531 ntBASIC17.85■□□□□ 0.45
Trim56Q80VI1 Gm6226-201ENSMUST00000117765 1146 ntBASIC17.85■□□□□ 0.45
Trim56Q80VI1 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC17.85■□□□□ 0.45
Trim56Q80VI1 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Gm2272-201ENSMUST00000194903 582 ntBASIC17.85■□□□□ 0.45
Trim56Q80VI1 Gm43767-201ENSMUST00000198933 381 ntBASIC17.85■□□□□ 0.45
Trim56Q80VI1 Gm43195-201ENSMUST00000200614 2332 ntBASIC17.85■□□□□ 0.45
Trim56Q80VI1 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms