Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.16□□□□□ -0.14
ShhQ62226 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC14.16□□□□□ -0.14
ShhQ62226 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
ShhQ62226 Gm10293-201ENSMUST00000076317 1002 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm6316-201ENSMUST00000082064 1020 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
ShhQ62226 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
ShhQ62226 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC14.16□□□□□ -0.14
ShhQ62226 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.16□□□□□ -0.14
ShhQ62226 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC14.15□□□□□ -0.14
ShhQ62226 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC14.15□□□□□ -0.14
ShhQ62226 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
ShhQ62226 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Gm13616-201ENSMUST00000120600 222 ntBASIC14.15□□□□□ -0.14
ShhQ62226 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC14.15□□□□□ -0.14
ShhQ62226 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Gm5745-201ENSMUST00000183748 313 ntBASIC14.15□□□□□ -0.14
ShhQ62226 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC14.15□□□□□ -0.14
ShhQ62226 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Gm7229-201ENSMUST00000214719 1007 ntBASIC14.15□□□□□ -0.14
ShhQ62226 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
ShhQ62226 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ShhQ62226 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ShhQ62226 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ShhQ62226 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ShhQ62226 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
ShhQ62226 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Gm20949-201ENSMUST00000206478 952 ntBASIC14.14□□□□□ -0.15
ShhQ62226 Gm44945-201ENSMUST00000206764 1187 ntBASIC14.14□□□□□ -0.15
ShhQ62226 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC14.14□□□□□ -0.15
ShhQ62226 AC117588.1-201ENSMUST00000228510 999 ntBASIC14.14□□□□□ -0.15
ShhQ62226 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
ShhQ62226 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC14.14□□□□□ -0.15
ShhQ62226 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ShhQ62226 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ShhQ62226 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ShhQ62226 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC14.13□□□□□ -0.15
ShhQ62226 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
ShhQ62226 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC14.13□□□□□ -0.15
ShhQ62226 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ShhQ62226 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC14.13□□□□□ -0.15
ShhQ62226 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC14.13□□□□□ -0.15
ShhQ62226 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC14.13□□□□□ -0.15
ShhQ62226 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC14.13□□□□□ -0.15
ShhQ62226 Arhgef33-209ENSMUST00000225223 714 ntBASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 57.5 ms