Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim27Q62158 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 AC138767.1-201ENSMUST00000222661 415 ntBASIC18.63■□□□□ 0.57
Trim27Q62158 AC131709.1-201ENSMUST00000224731 1180 ntBASIC18.63■□□□□ 0.57
Trim27Q62158 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Trim27Q62158 Gm10313-201ENSMUST00000095320 1002 ntBASIC18.63■□□□□ 0.57
Trim27Q62158 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Trim27Q62158 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC18.62■□□□□ 0.57
Trim27Q62158 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC18.62■□□□□ 0.57
Trim27Q62158 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC18.62■□□□□ 0.57
Trim27Q62158 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Trim27Q62158 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim27Q62158 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Trim27Q62158 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Sybu-209ENSMUST00000228639 4113 ntBASIC18.61■□□□□ 0.57
Trim27Q62158 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
Trim27Q62158 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Trim27Q62158 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC18.61■□□□□ 0.57
Trim27Q62158 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC18.61■□□□□ 0.57
Trim27Q62158 AC133598.3-202ENSMUST00000224219 531 ntBASIC18.61■□□□□ 0.57
Trim27Q62158 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trim27Q62158 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim27Q62158 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Trim27Q62158 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC18.6■□□□□ 0.57
Trim27Q62158 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Gm11873-201ENSMUST00000117877 1304 ntBASIC18.6■□□□□ 0.57
Trim27Q62158 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC18.6■□□□□ 0.57
Trim27Q62158 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC18.6■□□□□ 0.57
Trim27Q62158 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Trim27Q62158 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim27Q62158 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim27Q62158 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim27Q62158 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim27Q62158 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Trim27Q62158 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim27Q62158 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Trim27Q62158 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim27Q62158 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim27Q62158 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim27Q62158 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Trim27Q62158 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC18.59■□□□□ 0.57
Trim27Q62158 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC18.59■□□□□ 0.57
Trim27Q62158 Mxra8os-201ENSMUST00000097740 687 ntBASIC18.59■□□□□ 0.57
Trim27Q62158 AC025913.2-201ENSMUST00000220136 1766 ntBASIC18.59■□□□□ 0.57
Trim27Q62158 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim27Q62158 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim27Q62158 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms