Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Gm13233-201ENSMUST00000118760 1443 ntBASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Gm13244-201ENSMUST00000118855 1446 ntBASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Upf3aQ3ULJ3 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Gm13015-201ENSMUST00000118674 204 ntBASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Gm15593-201ENSMUST00000122085 1008 ntBASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Gm29541-201ENSMUST00000191351 678 ntBASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Gm38294-201ENSMUST00000192831 381 ntBASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Upf3aQ3ULJ3 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Gm27920-201ENSMUST00000183953 96 ntBASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Gm17837-201ENSMUST00000186435 985 ntBASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC15.91■□□□□ 0.14
Upf3aQ3ULJ3 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Gm13453-201ENSMUST00000118708 357 ntBASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Gm18049-201ENSMUST00000208909 581 ntBASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 AC164567.1-201ENSMUST00000219185 960 ntBASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Gm42473-201ENSMUST00000201056 2291 ntBASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms