Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm5682-201ENSMUST00000173402 505 ntBASIC14.54□□□□□ -0.08
Sox3P53784 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Sox3P53784 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC14.54□□□□□ -0.08
Sox3P53784 Gm5312-201ENSMUST00000203728 547 ntBASIC14.54□□□□□ -0.08
Sox3P53784 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox3P53784 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox3P53784 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox3P53784 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox3P53784 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox3P53784 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox3P53784 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox3P53784 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Sox3P53784 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox3P53784 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC14.54□□□□□ -0.08
Sox3P53784 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Sox3P53784 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC14.53□□□□□ -0.08
Sox3P53784 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Sox3P53784 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Sox3P53784 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC14.53□□□□□ -0.08
Sox3P53784 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC14.53□□□□□ -0.08
Sox3P53784 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Sox3P53784 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Sox3P53784 Gm44729-201ENSMUST00000206759 2052 ntBASIC14.53□□□□□ -0.08
Sox3P53784 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox3P53784 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Sox3P53784 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox3P53784 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox3P53784 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox3P53784 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Sox3P53784 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox3P53784 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox3P53784 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox3P53784 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Sox3P53784 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox3P53784 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Sox3P53784 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC14.52□□□□□ -0.08
Sox3P53784 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Sox3P53784 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC14.52□□□□□ -0.08
Sox3P53784 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Sox3P53784 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Sox3P53784 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Sox3P53784 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
Sox3P53784 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC14.51□□□□□ -0.09
Sox3P53784 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
Sox3P53784 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC14.51□□□□□ -0.09
Sox3P53784 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC14.51□□□□□ -0.09
Sox3P53784 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
Sox3P53784 Gm27300-201ENSMUST00000184085 97 ntBASIC14.51□□□□□ -0.09
Sox3P53784 Gm27335-201ENSMUST00000184758 97 ntBASIC14.51□□□□□ -0.09
Sox3P53784 AC154572.2-201ENSMUST00000225105 997 ntBASIC14.51□□□□□ -0.09
Sox3P53784 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Sox3P53784 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
Sox3P53784 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
Sox3P53784 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Sox3P53784 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC14.51□□□□□ -0.09
Sox3P53784 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Sox3P53784 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 65.4 ms