Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Chd3B1AR17 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Chd3B1AR17 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC14.83□□□□□ -0.03
Chd3B1AR17 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Chd3B1AR17 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC14.83□□□□□ -0.03
Chd3B1AR17 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC14.83□□□□□ -0.03
Chd3B1AR17 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Chd3B1AR17 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Chd3B1AR17 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
Chd3B1AR17 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC14.83□□□□□ -0.03
Chd3B1AR17 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Chd3B1AR17 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Chd3B1AR17 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chd3B1AR17 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Chd3B1AR17 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chd3B1AR17 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
Chd3B1AR17 Gm43352-201ENSMUST00000196419 3065 ntBASIC14.83□□□□□ -0.04
Chd3B1AR17 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chd3B1AR17 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chd3B1AR17 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC14.83□□□□□ -0.04
Chd3B1AR17 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Chd3B1AR17 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC14.83□□□□□ -0.04
Chd3B1AR17 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chd3B1AR17 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Chd3B1AR17 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Chd3B1AR17 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chd3B1AR17 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chd3B1AR17 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chd3B1AR17 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Auts2-212ENSMUST00000178555 309 ntBASIC14.82□□□□□ -0.04
Chd3B1AR17 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 AC140397.2-201ENSMUST00000224213 834 ntBASIC14.82□□□□□ -0.04
Chd3B1AR17 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Chd3B1AR17 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chd3B1AR17 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Mir449b-201ENSMUST00000104833 80 ntBASIC14.81□□□□□ -0.04
Chd3B1AR17 Gm29541-201ENSMUST00000191351 678 ntBASIC14.81□□□□□ -0.04
Chd3B1AR17 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC14.81□□□□□ -0.04
Chd3B1AR17 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC14.81□□□□□ -0.04
Chd3B1AR17 CT010506.4-201ENSMUST00000225457 351 ntBASIC14.81□□□□□ -0.04
Chd3B1AR17 AC151836.1-202ENSMUST00000226259 753 ntBASIC14.81□□□□□ -0.04
Chd3B1AR17 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Chd3B1AR17 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Gm5049-201ENSMUST00000195878 1590 ntBASIC14.81□□□□□ -0.04
Chd3B1AR17 Gm8096-201ENSMUST00000209921 1591 ntBASIC14.81□□□□□ -0.04
Chd3B1AR17 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Chd3B1AR17 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC14.81□□□□□ -0.04
Chd3B1AR17 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Chd3B1AR17 Gm6226-201ENSMUST00000117765 1146 ntBASIC14.81□□□□□ -0.04
Chd3B1AR17 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Chd3B1AR17 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Chd3B1AR17 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms