Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Scn11aQ9R053 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Scn11aQ9R053 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Scn11aQ9R053 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
Scn11aQ9R053 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Scn11aQ9R053 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Scn11aQ9R053 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn11aQ9R053 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.83■□□□□ 0.44
Scn11aQ9R053 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn11aQ9R053 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC17.83■□□□□ 0.44
Scn11aQ9R053 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC17.83■□□□□ 0.44
Scn11aQ9R053 Gm18766-201ENSMUST00000189811 808 ntBASIC17.83■□□□□ 0.44
Scn11aQ9R053 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Scn11aQ9R053 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.44
Scn11aQ9R053 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn11aQ9R053 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.83■□□□□ 0.44
Scn11aQ9R053 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn11aQ9R053 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn11aQ9R053 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Mir8102-201ENSMUST00000184148 139 ntBASIC17.82■□□□□ 0.44
Scn11aQ9R053 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC17.82■□□□□ 0.44
Scn11aQ9R053 AC158529.1-201ENSMUST00000223618 239 ntBASIC17.82■□□□□ 0.44
Scn11aQ9R053 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn11aQ9R053 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Gm6539-201ENSMUST00000119157 1064 ntBASIC17.81■□□□□ 0.44
Scn11aQ9R053 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC17.81■□□□□ 0.44
Scn11aQ9R053 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Gm37230-201ENSMUST00000194491 818 ntBASIC17.81■□□□□ 0.44
Scn11aQ9R053 Olfr286-202ENSMUST00000205305 969 ntBASIC17.81■□□□□ 0.44
Scn11aQ9R053 Gm7775-201ENSMUST00000218871 853 ntBASIC17.81■□□□□ 0.44
Scn11aQ9R053 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Gm24543-201ENSMUST00000103867 82 ntBASIC17.81■□□□□ 0.44
Scn11aQ9R053 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Gm8410-201ENSMUST00000117225 605 ntBASIC17.81■□□□□ 0.44
Scn11aQ9R053 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Scn11aQ9R053 AC149588.3-201ENSMUST00000227515 150 ntBASIC17.81■□□□□ 0.44
Scn11aQ9R053 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn11aQ9R053 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.8■□□□□ 0.44
Scn11aQ9R053 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Gm27306-201ENSMUST00000183970 107 ntBASIC17.8■□□□□ 0.44
Scn11aQ9R053 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Gm44855-201ENSMUST00000205725 362 ntBASIC17.8■□□□□ 0.44
Scn11aQ9R053 AC135669.1-201ENSMUST00000213585 412 ntBASIC17.8■□□□□ 0.44
Scn11aQ9R053 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn11aQ9R053 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms