Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Gm1818-201ENSMUST00000169406 1184 ntBASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Gm27357-201ENSMUST00000183754 135 ntBASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 AC163637.1-201ENSMUST00000215491 1894 ntBASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Gm17807-201ENSMUST00000186869 298 ntBASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Gm44454-201ENSMUST00000198541 138 ntBASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim39Q9ESN2 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Gm42473-201ENSMUST00000201056 2291 ntBASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Gm21362-201ENSMUST00000194272 928 ntBASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Trim39Q9ESN2 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim39Q9ESN2 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC14.23□□□□□ -0.13
Trim39Q9ESN2 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim39Q9ESN2 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim39Q9ESN2 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim39Q9ESN2 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim39Q9ESN2 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim39Q9ESN2 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
Trim39Q9ESN2 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.23□□□□□ -0.13
Trim39Q9ESN2 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms