Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 AV026068-213ENSMUST00000223675 1171 ntBASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Gm45760-201ENSMUST00000212190 1782 ntBASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Gm8097-201ENSMUST00000117903 829 ntBASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Gm4459-201ENSMUST00000118750 468 ntBASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Gm12260-201ENSMUST00000122447 411 ntBASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Gm6550-201ENSMUST00000187574 993 ntBASIC17.02■□□□□ 0.32
Smc1aQ9CU62 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Smc1aQ9CU62 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.31
Smc1aQ9CU62 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Smc1aQ9CU62 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Gm44729-201ENSMUST00000206759 2052 ntBASIC17.01■□□□□ 0.31
Smc1aQ9CU62 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Gm6736-201ENSMUST00000166583 948 ntBASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Gm27702-201ENSMUST00000184512 56 ntBASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Gm6089-201ENSMUST00000197666 938 ntBASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Gm42670-201ENSMUST00000201816 1292 ntBASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 BC037039-201ENSMUST00000192003 2205 ntBASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Smc1aQ9CU62 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17■□□□□ 0.31
Smc1aQ9CU62 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Smc1aQ9CU62 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC17■□□□□ 0.31
Smc1aQ9CU62 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17■□□□□ 0.31
Smc1aQ9CU62 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Smc1aQ9CU62 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC17■□□□□ 0.31
Smc1aQ9CU62 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC17■□□□□ 0.31
Smc1aQ9CU62 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Smc1aQ9CU62 Gm16425-201ENSMUST00000118143 3130 ntBASIC17■□□□□ 0.31
Smc1aQ9CU62 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Smc1aQ9CU62 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC17■□□□□ 0.31
Smc1aQ9CU62 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC17■□□□□ 0.31
Smc1aQ9CU62 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Smc1aQ9CU62 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC17■□□□□ 0.31
Smc1aQ9CU62 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC17■□□□□ 0.31
Smc1aQ9CU62 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Smc1aQ9CU62 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17■□□□□ 0.31
Smc1aQ9CU62 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Smc1aQ9CU62 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Smc1aQ9CU62 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Smc1aQ9CU62 AC154222.1-201ENSMUST00000223882 475 ntBASIC17■□□□□ 0.31
Smc1aQ9CU62 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms