Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 AC154222.1-201ENSMUST00000223882 475 ntBASIC18.36■□□□□ 0.53
Brf1Q8CFK2 AC131709.1-201ENSMUST00000224731 1180 ntBASIC18.36■□□□□ 0.53
Brf1Q8CFK2 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Gm27300-201ENSMUST00000184085 97 ntBASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Gm27335-201ENSMUST00000184758 97 ntBASIC18.35■□□□□ 0.53
Brf1Q8CFK2 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC18.35■□□□□ 0.53
Brf1Q8CFK2 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Brf1Q8CFK2 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Gm18246-201ENSMUST00000221023 728 ntBASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 AC122901.1-201ENSMUST00000214203 1790 ntBASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Brf1Q8CFK2 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.53
Brf1Q8CFK2 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Brf1Q8CFK2 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Brf1Q8CFK2 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Brf1Q8CFK2 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Brf1Q8CFK2 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Brf1Q8CFK2 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Brf1Q8CFK2 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Celf4-206ENSMUST00000224553 1729 ntBASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 AC119177.1-201ENSMUST00000227647 1332 ntBASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Brf1Q8CFK2 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms